PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_04677A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family LBD
Protein Properties Length: 213aa    MW: 22039 Da    PI: 7.9042
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_04677AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.83.8e-38291301101
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                +C aCk+lrr+C+++Cv+apyf  +q +++fa++hk+FGasn +kll++lp  +r +a+ +++yeA+ar+rdPvyG+v+ i++l
  Oropetium_20150105_04677A  29 PCGACKFLRRRCVPECVFAPYFSTDQgAARFAAIHKVFGASNASKLLSHLPVADRCEAVVTITYEAQARLRDPVYGCVAQIFAL 112
                                7***********************9989******************************************************** PP

                     DUF260  84 qqqleqlkaelallkeel 101
                                qqq++ l+a+l ++k++l
  Oropetium_20150105_04677A 113 QQQVAILQAQLMQAKAQL 130
                                ***********9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8128130IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3729127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MAAGAAGNGG GCAAAAAASS GGAPGAGSPC GACKFLRRRC VPECVFAPYF STDQGAARFA  60
AIHKVFGASN ASKLLSHLPV ADRCEAVVTI TYEAQARLRD PVYGCVAQIF ALQQQVAILQ  120
AQLMQAKAQL ACGGSAHSPV SHHQWSDSNS IGSLLRQQDN NNCFPAGGAL SPEIMASFRD  180
DVVMQQHCGK ADATGDLQYL VQAMMRSPNY SM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641871e-122AK064187.1 Oryza sativa Japonica Group cDNA clone:002-104-C02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454795.13e-98hypothetical protein SORBIDRAFT_04g037550
SwissprotQ9SLB73e-60LBD16_ARATH; LOB domain-containing protein 16
TrEMBLC5XVZ83e-98C5XVZ8_SORBI; Putative uncharacterized protein Sb04g037550
STRINGSb04g037550.18e-98(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105993443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.18e-39lateral organ boundaries-domain 29